PIG Genes and ULBP2 Drive a Novel Mechanism of NK-Cell Mediated Cytotoxicity (#204)
NK-cell cytotoxicity relies on contact-dependent and -independent mechanisms. Contact-dependent cytotoxicity is known to involve either granule exocytosis (a rapid process) or death receptors (DRs) canonical pathways, but existence of alternative killing mechanisms has been suggested. A strong understanding of these killing properties is important for therapeutic strategies that rely on NK cells, such as allogeneic hematopoietic stem cell transplantation, chimeric antigen receptor (CAR) T- and NK- cells, or cellular engagers for T or NK cells with tumor cells.
We used B-ALL leukemic cell lines and primary cells partially resistant to canonical NK-cell killing to study alternative killing pathways. We found that NK cells efficiently killed these presumed resistant target cells after a prolonged (>12h) co-culture through a contact-dependent mechanism. Using NK cells from patients with perforin (PRF1) expression or degranulation (UNC13D) defects, combined with target cells expressing a dominant-negative FADD conferring a stable resistance to DRs-mediated apoptosis, we demonstrated that this delayed killing involved a novel contact-dependent mechanism that differs from both the canonical granule exocytosis and DRs pathways. Molecularly, genome-wide CRISPR screens and a surfaceome analysis on target cells identified the GPI-anchored synthesis pathway and ULBP2 expression to regulate this new killing mechanism. ULBP2 expression was reduced in resistant target cells and its overexpression could restore NK-cell sensitivity with no contribution of the granule exocytosis pathway. ULBP2 expression also correlated with improved overall survival in a large cohort of adult patients with B-ALL leukemia, demonstrating the clinical relevance of this new killing mechanism.
Overall, our work demonstrates that NK cells can use multiple mechanisms to kill target cells including a novel contact-dependent, degranulation- and death receptors-independent pathway. This process relied on a distinctive low NK-cell metabolic profile, supporting a model of metabolic flexibility among killing mechanisms. Finally, it revealed anchored proteins and ULBP2 as potential targets for its modulation.